RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g47740.1 View Network Show in Genome Browser |
| Other Names | Os03g0680800 |
| Description | homeodomain protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 27057031-27063684 Nucleotide Length: 2028 |
| Protein-coding | LOC_Os03g47740 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g19694 LOC_Os01g62920 LOC_Os02g08544 LOC_Os03g03164 LOC_Os03g47016 LOC_Os03g47036 LOC_Os02g13310 LOC_Os03g12860 |
| Downstream Genes | LOC_Os05g38120 LOC_Os05g03884 LOC_Os07g03770 LOC_Os03g51690 LOC_Os03g51710 LOC_Os03g56110 LOC_Os03g56140 LOC_Os08g19650 LOC_Os06g43860 LOC_Os06g38470 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5144-5p |
| Reference | |
|---|---|
| PubMed | 16105854 16163610 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g47740.1 |
| Rice Genome Annotation | LOC_Os03g47740.1 |
| Ricechip | LOC_Os03g47740.1 |
| KEGG | osa:4333726 dosa:Os03t0680800-02 |
| Entrez-Gene | 4333726 |