RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g47949.1 View Network Show in Genome Browser |
| Other Names | Os03g0683866,Os03g0683833 |
| Description | HECT-domain domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 27257668-27263489 Nucleotide Length: 1611 |
| Protein-coding | LOC_Os03g47949 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g36930 LOC_Os02g05870 LOC_Os03g47780 LOC_Os02g11050 |
| Downstream Genes | LOC_Os09g31130 LOC_Os09g27210 LOC_Os08g39370 LOC_Os05g05860 LOC_Os12g42150 LOC_Os10g41110 LOC_Os06g39870 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR159a.1 osa-miR159b |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g47949.1 |
| Rice Genome Annotation | LOC_Os03g47949.1 |
| Ricechip | LOC_Os03g47949.1 |
| KEGG | dosa:Os03t0683866-00 |