RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g48180.1 View Network Show in Genome Browser |
| Other Names | Os03g0687000 |
| Description | peptide transporter PTR2, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 27413470-27418777 Nucleotide Length: 1764 |
| Protein-coding | LOC_Os03g48180 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g14170 LOC_Os01g59150 LOC_Os03g29350 LOC_Os02g43660 LOC_Os02g39850 LOC_Os03g45170 LOC_Os03g41390 LOC_Os01g04710 LOC_Os02g08230 LOC_Os03g04260 LOC_Os01g19694 More.. |
| Downstream Genes | LOC_Os04g40730 LOC_Os08g23180 LOC_Os03g50030 LOC_Os04g42620 LOC_Os10g22590 LOC_Os03g56110 LOC_Os07g42280 LOC_Os06g08080 LOC_Os08g10450 LOC_Os04g48230 LOC_Os03g56140 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR168a-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g48180.1 |
| Rice Genome Annotation | LOC_Os03g48180.1 |
| Ricechip | LOC_Os03g48180.1 |
| KEGG | osa:9269916 dosa:Os03t0687000-02 |
| Entrez-Gene | 9269916 |