RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g48850.2 View Network Show in Genome Browser |
| Other Names | Os03g0694900 |
| Description | valyl-tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 27826866-27835161 Nucleotide Length: 3165 |
| Protein-coding | LOC_Os03g48850 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g08050 LOC_Os03g08020 LOC_Os03g08010 LOC_Os02g55140 LOC_Os03g11120 LOC_Os01g54020 LOC_Os01g31610 LOC_Os02g02860 LOC_Os02g39290 LOC_Os01g25100 LOC_Os02g35590 More.. |
| Downstream Genes | LOC_Os06g31210 LOC_Os09g21110 LOC_Os12g24650 LOC_Os09g32650 LOC_Os05g07030 LOC_Os09g18320 LOC_Os09g38420 LOC_Os10g26050 LOC_Os06g01400 LOC_Os11g37730 LOC_Os11g14040 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR414 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g48850.2 |
| Rice Genome Annotation | LOC_Os03g48850.2 |
| Ricechip | LOC_Os03g48850.2 |
| KEGG | osa:4333799 dosa:Os03t0694900-01 |
| Entrez-Gene | 4333799 |