RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os03g48970.1 View Network Show in Genome Browser
Other Names	Os03g0696300
Description	nuclear transcription factor Y subunit, putative, expressed
Gene Attributes	Chromosome: Chr3 CDS Coordinates (5'-3'): 27890360-27894503 Nucleotide Length: 777
Protein-coding	LOC_Os03g48970

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009790	embryo development	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0009791	post-embryonic development	Biological Process	IEA
GO:0000003	reproduction	Biological Process	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0005654	nucleoplasm	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g61810 LOC_Os02g07450 LOC_Os03g14669 LOC_Os03g29970 LOC_Os02g49370 LOC_Os01g70890
Downstream Genes	LOC_Os09g30310 LOC_Os05g38820 LOC_Os09g32690 LOC_Os08g38780 LOC_Os07g41580 LOC_Os06g45640 LOC_Os10g40990 LOC_Os05g49780 LOC_Os08g07740 LOC_Os08g10560 LOC_Os07g47630 More..

miRNA Regulations
miRNAs	osa-miR169d osa-miR169h osa-miR169i-5p.1 osa-miR169j osa-miR169k osa-miR169l osa-miR169m osa-miR169n osa-miR169o osa-miR169r-5p osa-miR169a osa-miR169b osa-miR169c osa-miR169e osa-miR169f.1 osa-miR169g osa-miR5503

Reference
PubMed	18193457

Database Links
Gramene	LOC_Os03g48970.1
Rice Genome Annotation	LOC_Os03g48970.1
Ricechip	LOC_Os03g48970.1
KEGG	osa:4333806 dosa:Os03t0696300-01
Entrez-Gene	4333806