RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g49600.1 View Network Show in Genome Browser |
| Other Names | Os03g0703000 |
| Description | Os3bglu7 - beta-glucosidase, exo-beta-glucanse, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 28240285-28245347 Nucleotide Length: 1515 |
| Protein-coding | LOC_Os03g49600 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g12250 LOC_Os01g55220 LOC_Os02g53200 LOC_Os01g61590 LOC_Os03g04220 LOC_Os01g59150 LOC_Os01g08750 LOC_Os01g09010 LOC_Os02g47220 LOC_Os01g11710 LOC_Os01g59120 More.. |
| Downstream Genes | LOC_Os04g42620 LOC_Os07g14850 LOC_Os05g45210 LOC_Os10g22590 LOC_Os06g20370 LOC_Os04g59330 LOC_Os05g04820 LOC_Os04g16450 LOC_Os05g01600 LOC_Os03g55840 LOC_Os07g41200 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00500 rn01100 rn01110 rn00460 rn00940 |
| Metacyc Pathways | PWY-5176 PWY-4441 PWY-3121 PWY-6002 |
| Reference | |
|---|---|
| PubMed | 19766588 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g49600.1 |
| Rice Genome Annotation | LOC_Os03g49600.1 |
| Ricechip | LOC_Os03g49600.1 |
| KEGG | osa:4333841 dosa:Os03t0703000-01 |
| Entrez-Gene | 4333841 |