RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g49800.1 View Network Show in Genome Browser |
| Other Names | Os03g0705300 |
| Description | phosphatidylinositol-4-phosphate 5-kinase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 28358095-28362611 Nucleotide Length: 2196 |
| Protein-coding | LOC_Os03g49800 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g59790 LOC_Os03g28140 LOC_Os01g16030 LOC_Os01g04660 LOC_Os02g54910 LOC_Os01g27520 LOC_Os03g20370 LOC_Os01g16240 LOC_Os01g17190 LOC_Os03g07850 LOC_Os03g26450 More.. |
| Downstream Genes | LOC_Os05g41060 LOC_Os03g59740 LOC_Os07g12200 LOC_Os07g12170 LOC_Os03g58640 LOC_Os08g13030 LOC_Os12g40780 LOC_Os03g63690 LOC_Os08g12960 LOC_Os03g50320 LOC_Os07g48780 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00562 rn01100 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g49800.1 |
| Rice Genome Annotation | LOC_Os03g49800.1 |
| Ricechip | LOC_Os03g49800.1 |
| KEGG | osa:4333853 dosa:Os03t0705300-01 |
| Entrez-Gene | 4333853 |