RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g50380.1 View Network Show in Genome Browser |
| Other Names | Os03g0711700 |
| Description | DNA-directed RNA polymerase I subunit RPA12, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 28746650-28748955 Nucleotide Length: 381 |
| Protein-coding | LOC_Os03g50380 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g01230 LOC_Os01g43020 LOC_Os03g18410 LOC_Os01g59140 LOC_Os03g38960 LOC_Os02g26850 LOC_Os02g49180 LOC_Os03g22350 LOC_Os01g46570 LOC_Os02g49270 LOC_Os03g02420 More.. |
| Downstream Genes | LOC_Os12g36950 LOC_Os12g37370 LOC_Os10g35290 LOC_Os05g02400 LOC_Os07g27930 LOC_Os11g08940 LOC_Os12g09280 LOC_Os07g25440 LOC_Os06g48230 LOC_Os05g49770 LOC_Os05g05860 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g50380.1 |
| Rice Genome Annotation | LOC_Os03g50380.1 |
| Ricechip | LOC_Os03g50380.1 |
| KEGG | osa:4333888 dosa:Os03t0711700-00 |
| Entrez-Gene | 4333888 |