RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g50980.1 View Network Show in Genome Browser |
| Other Names | Os03g0719100 |
| Description | ATSIZ1/SIZ1, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 29126787-29134966 Nucleotide Length: 2442 |
| Protein-coding | LOC_Os03g50980 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0040007 | growth | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g26630 LOC_Os01g70020 LOC_Os03g03130 LOC_Os03g21270 LOC_Os03g40010 LOC_Os01g36920 LOC_Os01g36890 LOC_Os02g52250 |
| Downstream Genes | LOC_Os06g14470 LOC_Os04g54350 LOC_Os10g39120 LOC_Os11g08660 LOC_Os05g46780 LOC_Os06g34040 LOC_Os08g05840 LOC_Os04g49130 LOC_Os09g09480 |
| Reference | |
|---|---|
| PubMed | 20561251 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g50980.1 |
| Rice Genome Annotation | LOC_Os03g50980.1 |
| Ricechip | LOC_Os03g50980.1 |
| KEGG | osa:4333925 dosa:Os03t0719100-01 |
| Entrez-Gene | 4333925 |