RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g51690.3 View Network Show in Genome Browser |
| Other Names | Os03g0727000 |
| Description | Homeobox domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 29596277-29606861 Nucleotide Length: 729 |
| Protein-coding | LOC_Os03g51690 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g51050 LOC_Os03g13240 LOC_Os03g47740 LOC_Os03g13250 LOC_Os01g04950 LOC_Os03g13274 LOC_Os03g12860 LOC_Os01g67630 LOC_Os03g03164 LOC_Os03g04570 LOC_Os02g47090 More.. |
| Downstream Genes | LOC_Os12g04440 LOC_Os11g04670 LOC_Os12g43950 LOC_Os06g04870 LOC_Os06g04850 LOC_Os07g01070 LOC_Os10g02240 LOC_Os10g02260 LOC_Os10g22560 LOC_Os10g02220 LOC_Os06g49220 More.. |
| Reference | |
|---|---|
| PubMed | 8755613 10080693 11536429 10753522 22207572 10488233 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g51690.3 |
| Rice Genome Annotation | LOC_Os03g51690.3 |
| Ricechip | LOC_Os03g51690.3 |
| KEGG | osa:4333973 dosa:Os03t0727000-01 |
| Entrez-Gene | 4333973 |