RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g52180.1 View Network Show in Genome Browser |
| Other Names | Os03g0732000 |
| Description | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 29956753-29958782 Nucleotide Length: 750 |
| Protein-coding | LOC_Os03g52180 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g53770 LOC_Os01g48690 LOC_Os02g04750 |
| Downstream Genes | LOC_Os03g58710 LOC_Os11g18366 LOC_Os11g35710 LOC_Os11g18194 LOC_Os05g14800 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR6248 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00900 rn01100 rn01110 |
| Metacyc Pathways | NONMEVIPP-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g52180.1 |
| Rice Genome Annotation | LOC_Os03g52180.1 |
| Ricechip | LOC_Os03g52180.1 |
| KEGG | osa:4334004 dosa:Os03t0732000-00 |
| Entrez-Gene | 4334004 |