RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g52239.1 View Network Show in Genome Browser |
| Other Names | Os03g0732100 |
| Description | homeobox domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 30002956-30014102 Nucleotide Length: 2373 |
| Protein-coding | LOC_Os03g52239 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g19694 LOC_Os01g62920 LOC_Os03g03164 |
| Downstream Genes | LOC_Os05g38120 LOC_Os05g03884 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR444a-3p.2 osa-miR444d.2 osa-miR444e |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g52239.1 |
| Rice Genome Annotation | LOC_Os03g52239.1 |
| Ricechip | LOC_Os03g52239.1 |
| KEGG | osa:9266975 dosa:Os03t0732100-01 |
| Entrez-Gene | 9266975 |