RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os03g52460.1 View Network Show in Genome Browser
Other Names	Os03g0735000
Description	glucose-1-phosphate adenylyltransferase large subunit, putative, expressed
Gene Attributes	Chromosome: Chr3 CDS Coordinates (5'-3'): 30099369-30104596 Nucleotide Length: 1536
Protein-coding	LOC_Os03g52460

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0005975	carbohydrate metabolic process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0006091	generation of precursor metabolites and energy	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0016740	transferase activity	Molecular Function	IEA
GO:0009536	plastid	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g52250 LOC_Os02g51070 LOC_Os02g56320 LOC_Os02g32660 LOC_Os01g63270 LOC_Os03g16150 LOC_Os02g30460 LOC_Os01g52400 LOC_Os01g18070 LOC_Os03g11050 LOC_Os01g66000 More..
Downstream Genes	LOC_Os08g09230 LOC_Os04g53310 LOC_Os05g45720 LOC_Os06g06560 LOC_Os06g12450 LOC_Os06g04200 LOC_Os07g22930 LOC_Os10g30156 LOC_Os04g33460 LOC_Os06g51084 LOC_Os06g26234 More..

Pathways
KEGG Pathways	rn00500 rn00520 rn01100 rn01110
Metacyc Pathways	DTDPRHAMSYN-PWY PWY-622 GLYCOGENSYNTH-PWY UDPNACETYLGALSYN-PWY

Reference
PubMed	16275672 15821022 17406793

Database Links
Gramene	LOC_Os03g52460.1
Rice Genome Annotation	LOC_Os03g52460.1
Ricechip	LOC_Os03g52460.1
KEGG	osa:4334020 dosa:Os03t0735000-01
Entrez-Gene	4334020