RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g52630.1 View Network Show in Genome Browser |
| Other Names | Os03g0736300 |
| Description | endoglucanase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 30181636-30185153 Nucleotide Length: 1863 |
| Protein-coding | LOC_Os03g52630 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005768 | endosome | Cellular Component | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g15230 LOC_Os03g20760 LOC_Os03g43650 LOC_Os01g25540 LOC_Os02g41650 LOC_Os02g41630 LOC_Os01g68900 LOC_Os01g65780 |
| Downstream Genes | LOC_Os06g03640 LOC_Os05g32110 LOC_Os07g24190 LOC_Os11g30360 LOC_Os07g10770 LOC_Os05g48900 LOC_Os06g11490 LOC_Os07g06680 LOC_Os09g25900 LOC_Os03g57460 LOC_Os05g48270 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR396c-3p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00500 rn01100 |
| Metacyc Pathways | PWY-1001 |
| Reference | |
|---|---|
| PubMed | 23308094 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g52630.1 |
| Rice Genome Annotation | LOC_Os03g52630.1 |
| Ricechip | LOC_Os03g52630.1 |
| KEGG | osa:4334029 dosa:Os03t0736300-01 |
| Entrez-Gene | 4334029 |