RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g52650.1 View Network Show in Genome Browser |
| Other Names | Os03g0736500 |
| Description | syntaxin-related protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 30192884-30194132 Nucleotide Length: 936 |
| Protein-coding | LOC_Os03g52650 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g73230 LOC_Os02g25580 LOC_Os02g24080 LOC_Os03g25390 LOC_Os01g08510 LOC_Os03g14690 LOC_Os02g02720 LOC_Os01g61780 LOC_Os02g57510 LOC_Os03g06960 LOC_Os03g08960 More.. |
| Downstream Genes | LOC_Os05g48020 LOC_Os04g44810 LOC_Os06g04450 LOC_Os04g18030 LOC_Os05g26890 LOC_Os12g35620 LOC_Os12g09089 LOC_Os10g20240 LOC_Os08g14640 LOC_Os10g10500 LOC_Os08g17600 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g52650.1 |
| Rice Genome Annotation | LOC_Os03g52650.1 |
| Ricechip | LOC_Os03g52650.1 |
| KEGG | dosa:Os03t0736500-01 |