RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g52840.3 View Network Show in Genome Browser |
| Other Names | Os03g0738400 |
| Description | serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 30299938-30304249 Nucleotide Length: 1284 |
| Protein-coding | LOC_Os03g52840 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0008219 | cell death | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g57240 LOC_Os03g51080 LOC_Os01g01080 LOC_Os03g02600 LOC_Os02g13310 LOC_Os01g62920 LOC_Os03g13300 LOC_Os03g03720 LOC_Os01g10280 LOC_Os02g56130 LOC_Os01g65260 More.. |
| Downstream Genes | LOC_Os08g10570 LOC_Os04g43650 LOC_Os04g53230 LOC_Os09g29190 LOC_Os10g41520 LOC_Os08g36320 LOC_Os07g31280 LOC_Os04g09810 LOC_Os09g16910 LOC_Os12g35580 LOC_Os06g36680 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR530-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g52840.3 |
| Rice Genome Annotation | LOC_Os03g52840.3 |
| Ricechip | LOC_Os03g52840.3 |
| KEGG | osa:4334048 dosa:Os03t0738400-01 |
| Entrez-Gene | 4334048 |