RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g53000.1 View Network Show in Genome Browser |
| Other Names | Os03g0740800 |
| Description | XRCC4, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 30395653-30398414 Nucleotide Length: 825 |
| Protein-coding | LOC_Os03g53000 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g38970 LOC_Os03g18210 LOC_Os03g24339 LOC_Os03g10940 |
| Downstream Genes | LOC_Os04g51700 LOC_Os10g21910 LOC_Os03g63920 LOC_Os12g41250 LOC_Os07g08729 LOC_Os08g01054 LOC_Os07g46180 LOC_Os07g02350 LOC_Os07g32390 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g53000.1 |
| Rice Genome Annotation | LOC_Os03g53000.1 |
| Ricechip | LOC_Os03g53000.1 |
| KEGG | osa:4334058 dosa:Os03t0740800-01 |
| Entrez-Gene | 4334058 |