RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g53020.1 View Network Show in Genome Browser |
| Other Names | Os03g0741100 |
| Description | helix-loop-helix DNA-binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 30406830-30409447 Nucleotide Length: 900 |
| Protein-coding | LOC_Os03g53020 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g08440 LOC_Os03g08330 LOC_Os01g50420 LOC_Os02g11070 LOC_Os02g43790 |
| Downstream Genes | LOC_Os04g43680 LOC_Os08g37660 LOC_Os05g27730 LOC_Os06g44010 LOC_Os08g36920 LOC_Os11g09010 LOC_Os06g46950 LOC_Os12g05440 LOC_Os10g06630 LOC_Os09g17152 LOC_Os05g45070 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g53020.1 |
| Rice Genome Annotation | LOC_Os03g53020.1 |
| Ricechip | LOC_Os03g53020.1 |
| KEGG | osa:4334060 dosa:Os03t0741100-01 |
| Entrez-Gene | 4334060 |