RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g53140.3 View Network Show in Genome Browser |
| Other Names | Os03g0742800 |
| Description | protein transport protein Sec23B, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 30476541-30482124 Nucleotide Length: 2274 |
| Protein-coding | LOC_Os03g53140 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g24220 LOC_Os01g68930 LOC_Os02g34630 LOC_Os03g02400 |
| Downstream Genes | LOC_Os11g29200 LOC_Os04g04020 LOC_Os06g44890 LOC_Os04g25550 LOC_Os06g01304 LOC_Os08g45060 LOC_Os10g06700 LOC_Os04g54840 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1860-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g53140.3 |
| Rice Genome Annotation | LOC_Os03g53140.3 |
| Ricechip | LOC_Os03g53140.3 |
| KEGG | osa:4334068 dosa:Os03t0742800-01 |
| Entrez-Gene | 4334068 |