RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g53150.2 View Network Show in Genome Browser |
| Other Names | Os03g0742900 |
| Description | OsIAA13 - Auxin-responsive Aux/IAA gene family member, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 30480662-30483289 Nucleotide Length: 675 |
| Protein-coding | LOC_Os03g53150 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g43410 LOC_Os01g59150 LOC_Os02g49950 LOC_Os01g55260 LOC_Os02g48360 |
| Downstream Genes | LOC_Os11g35350 LOC_Os11g30560 LOC_Os04g57140 LOC_Os12g43363 LOC_Os12g40900 LOC_Os05g41990 LOC_Os03g63930 LOC_Os12g40890 |
| Reference | |
|---|---|
| PubMed | 22608525 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g53150.2 |
| Rice Genome Annotation | LOC_Os03g53150.2 |
| Ricechip | LOC_Os03g53150.2 |
| KEGG | osa:4334069 dosa:Os03t0742900-01 |
| Entrez-Gene | 4334069 |