RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g53170.1 View Network Show in Genome Browser |
| Other Names | Os03g0743200 |
| Description | pentatricopeptide, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 30502405-30507088 Nucleotide Length: 1827 |
| Protein-coding | LOC_Os03g53170 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g46450 LOC_Os01g64300 LOC_Os03g44750 LOC_Os01g63510 LOC_Os01g46590 LOC_Os03g02290 |
| Downstream Genes | LOC_Os06g37570 LOC_Os05g06420 LOC_Os08g28980 LOC_Os12g42650 LOC_Os06g27650 LOC_Os05g49040 LOC_Os07g18120 LOC_Os03g57690 LOC_Os05g41290 LOC_Os03g57680 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g53170.1 |
| Rice Genome Annotation | LOC_Os03g53170.1 |
| Ricechip | LOC_Os03g53170.1 |
| KEGG | osa:9266678 dosa:Os03t0743200-01 |
| Entrez-Gene | 9266678 |