RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os03g53230.1 View Network Show in Genome Browser
Other Names	Os03g0743900
Description	bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed
Gene Attributes	Chromosome: Chr3 CDS Coordinates (5'-3'): 30532043-30535512 Nucleotide Length: 1434
Protein-coding	LOC_Os03g53230

Gene Ontology Classification
GO	Name	Type	Code
GO:0008150	biological_process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0016740	transferase activity	Molecular Function	IEA
GO:0005886	plasma membrane	Cellular Component	IEA
GO:0009536	plastid	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os03g14530 LOC_Os02g28810 LOC_Os03g02960 LOC_Os02g40880 LOC_Os03g50620 LOC_Os02g47140 LOC_Os03g21914 LOC_Os02g54470 LOC_Os01g67134 LOC_Os02g27760 LOC_Os02g14059 More..
Downstream Genes	LOC_Os07g10660 LOC_Os06g04290 LOC_Os05g48310 LOC_Os05g48220 LOC_Os04g50990 LOC_Os10g08930 LOC_Os04g28180 LOC_Os03g59310 LOC_Os07g12250 LOC_Os11g05562 LOC_Os08g44480 More..

miRNA Regulations
miRNAs	osa-miR395a osa-miR395o osa-miR395c osa-miR395b osa-miR395d osa-miR395e osa-miR395g osa-miR395h osa-miR395i osa-miR395j osa-miR395k osa-miR395l osa-miR395m osa-miR395n osa-miR395p osa-miR395q osa-miR395r osa-miR395s osa-miR395y osa-miR395t osa-miR395x osa-miR395f osa-miR395v osa-miR6251

Pathways
KEGG Pathways	rn00230 rn00920 rn01100 rn01120 rn00450
Metacyc Pathways	SO4ASSIM-PWY PWY-5278 SULFMETII-PWY PWY-5340 PWY-6683 DISSULFRED-PWY P224-PWY

Database Links
Gramene	LOC_Os03g53230.1
Rice Genome Annotation	LOC_Os03g53230.1
Ricechip	LOC_Os03g53230.1
KEGG	osa:4334073 dosa:Os03t0743900-01
Entrez-Gene	4334073