RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g53650.4 View Network Show in Genome Browser |
| Other Names | Os03g0747800 |
| Description | cysteine synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 30760004-30763963 Nucleotide Length: 780 |
| Protein-coding | LOC_Os03g53650 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g32030 LOC_Os03g50510 LOC_Os01g46980 LOC_Os01g53900 LOC_Os03g51600 LOC_Os02g05330 LOC_Os03g10190 LOC_Os01g37837 LOC_Os03g45920 LOC_Os03g11660 LOC_Os03g30830 More.. |
| Downstream Genes | LOC_Os04g02820 LOC_Os06g07960 LOC_Os06g07860 LOC_Os11g26850 LOC_Os03g63940 LOC_Os11g14220 LOC_Os04g46930 LOC_Os06g48750 LOC_Os08g04180 LOC_Os07g38730 LOC_Os06g37440 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g53650.4 |
| Rice Genome Annotation | LOC_Os03g53650.4 |
| Ricechip | LOC_Os03g53650.4 |
| KEGG | osa:4334101 dosa:Os03t0747800-01 |
| Entrez-Gene | 4334101 |