RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g53690.1 View Network Show in Genome Browser |
| Other Names | Os03g0748100 |
| Description | oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 30788422-30789523 Nucleotide Length: 831 |
| Protein-coding | LOC_Os03g53690 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g18590 LOC_Os02g10320 LOC_Os03g39860 |
| Downstream Genes | LOC_Os08g43580 LOC_Os12g34890 LOC_Os09g36860 LOC_Os07g42420 LOC_Os06g09630 LOC_Os04g36800 LOC_Os03g63930 LOC_Os11g31900 LOC_Os05g31290 LOC_Os07g12150 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1439 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn01100 rn01110 rn01120 rn00061 rn01040 |
| Metacyc Pathways | PWY-5082 PWY-5076 PWY-5079 P127-PWY FERMENTATION-PWY PWY-3801 PWY66-21 PWY-5057 PWY-5078 FASYN-ELONG-PWY ENTBACSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g53690.1 |
| Rice Genome Annotation | LOC_Os03g53690.1 |
| Ricechip | LOC_Os03g53690.1 |
| KEGG | osa:4334104 dosa:Os03t0748100-01 |
| Entrez-Gene | 4334104 |