RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g53720.2 View Network Show in Genome Browser |
| Other Names | Os03g0748400 |
| Description | SRPK4, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 30803314-30807417 Nucleotide Length: 1230 |
| Protein-coding | LOC_Os03g53720 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g55340 LOC_Os01g10840 LOC_Os03g22380 LOC_Os02g14130 LOC_Os01g25189 LOC_Os03g16369 LOC_Os02g07830 LOC_Os01g72890 LOC_Os01g14860 LOC_Os03g17700 LOC_Os02g03890 More.. |
| Downstream Genes | LOC_Os07g47630 LOC_Os05g11730 LOC_Os05g48960 LOC_Os10g02630 LOC_Os06g35530 LOC_Os09g39220 LOC_Os06g24870 LOC_Os04g51820 LOC_Os08g01794 LOC_Os06g06090 LOC_Os05g04340 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g53720.2 |
| Rice Genome Annotation | LOC_Os03g53720.2 |
| Ricechip | LOC_Os03g53720.2 |
| KEGG | osa:4334107 dosa:Os03t0748400-01 |
| Entrez-Gene | 4334107 |