RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g53800.1 View Network Show in Genome Browser |
| Other Names | Os03g0749300 |
| Description | periplasmic beta-glucosidase precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 30851706-30857333 Nucleotide Length: 1878 |
| Protein-coding | LOC_Os03g53800 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g28450 LOC_Os02g48110 LOC_Os02g02410 LOC_Os03g03450 LOC_Os03g36730 LOC_Os03g01180 LOC_Os01g38510 LOC_Os01g58730 LOC_Os02g08180 LOC_Os01g23740 LOC_Os03g50880 More.. |
| Downstream Genes | LOC_Os05g06440 LOC_Os05g44360 LOC_Os06g39260 LOC_Os09g27830 LOC_Os08g17680 LOC_Os07g08430 LOC_Os11g09280 LOC_Os06g49480 LOC_Os11g37920 LOC_Os07g14270 LOC_Os06g50300 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5834 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g53800.1 |
| Rice Genome Annotation | LOC_Os03g53800.1 |
| Ricechip | LOC_Os03g53800.1 |
| KEGG | osa:4334114 dosa:Os03t0749300-01 |
| Entrez-Gene | 4334114 |