RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g53960.1 View Network Show in Genome Browser |
| Other Names | Os03g0750800 |
| Description | transcriptional adaptor, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 30935586-30943007 Nucleotide Length: 1713 |
| Protein-coding | LOC_Os03g53960 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g32750 LOC_Os01g63940 LOC_Os03g29470 LOC_Os02g10060 LOC_Os02g51880 LOC_Os02g40810 LOC_Os02g54120 LOC_Os03g45410 LOC_Os03g10570 LOC_Os02g04490 LOC_Os03g52594 More.. |
| Downstream Genes | LOC_Os10g28040 LOC_Os06g44030 LOC_Os09g26180 LOC_Os07g45064 LOC_Os08g04780 LOC_Os04g47270 LOC_Os05g05230 LOC_Os12g39070 LOC_Os04g40420 LOC_Os10g38850 LOC_Os06g08480 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5537 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g53960.1 |
| Rice Genome Annotation | LOC_Os03g53960.1 |
| Ricechip | LOC_Os03g53960.1 |
| KEGG | osa:4334126 dosa:Os03t0750800-01 |
| Entrez-Gene | 4334126 |