RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g54000.1 View Network Show in Genome Browser |
| Other Names | Os03g0751100 |
| Description | oligopeptide transporter, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 30959598-30963774 Nucleotide Length: 2274 |
| Protein-coding | LOC_Os03g54000 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0019725 | cellular homeostasis | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g19420 LOC_Os01g46720 LOC_Os03g32499 LOC_Os03g26210 LOC_Os03g51530 LOC_Os01g65110 LOC_Os02g40450 LOC_Os03g32490 LOC_Os01g65100 LOC_Os03g31730 LOC_Os01g57260 More.. |
| Downstream Genes | LOC_Os12g18410 LOC_Os07g15460 LOC_Os07g04930 LOC_Os11g15624 LOC_Os05g35050 LOC_Os11g18170 LOC_Os03g56110 LOC_Os12g34380 LOC_Os05g05200 LOC_Os03g56140 LOC_Os08g25200 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5530 osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g54000.1 |
| Rice Genome Annotation | LOC_Os03g54000.1 |
| Ricechip | LOC_Os03g54000.1 |
| KEGG | osa:4334129 dosa:Os03t0751100-01 |
| Entrez-Gene | 4334129 |