RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g54084.1 View Network Show in Genome Browser |
| Other Names | Os03g0752100 |
| Description | phytochrome C, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 31004724-31009782 Nucleotide Length: 3414 |
| Protein-coding | LOC_Os03g54084 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009605 | response to external stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g49500 LOC_Os03g19590 |
| Downstream Genes | LOC_Os04g23890 LOC_Os12g37570 LOC_Os04g08740 LOC_Os11g01140 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g54084.1 |
| Rice Genome Annotation | LOC_Os03g54084.1 |
| Ricechip | LOC_Os03g54084.1 |
| KEGG | osa:4334135 dosa:Os03t0752100-01 |
| Entrez-Gene | 4334135 |