RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g54091.1 View Network Show in Genome Browser |
| Other Names | Os03g0752200 |
| Description | OsTOP6A1 - Topoisomerase 6 subunit A homolog 1, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 31009978-31013940 Nucleotide Length: 1146 |
| Protein-coding | LOC_Os03g54091 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g10570 LOC_Os03g05570 LOC_Os01g57360 LOC_Os02g39890 LOC_Os02g37920 LOC_Os02g03340 LOC_Os02g04240 LOC_Os01g05090 LOC_Os03g29240 LOC_Os01g71960 LOC_Os02g33850 More.. |
| Downstream Genes | LOC_Os04g54340 LOC_Os11g40150 LOC_Os12g31370 LOC_Os09g10770 LOC_Os11g04954 LOC_Os12g04980 LOC_Os12g44390 LOC_Os11g32900 LOC_Os08g08030 LOC_Os08g12760 LOC_Os04g51940 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g54091.1 |
| Rice Genome Annotation | LOC_Os03g54091.1 |
| Ricechip | LOC_Os03g54091.1 |
| KEGG | osa:9267055 dosa:Os03t0752200-01 |
| Entrez-Gene | 9267055 |