RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g54930.1 View Network Show in Genome Browser |
| Other Names | Os03g0756500 |
| Description | VIP4, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 31225515-31231916 Nucleotide Length: 1818 |
| Protein-coding | LOC_Os03g54930 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g08970 LOC_Os03g10940 LOC_Os02g53230 LOC_Os01g08200 LOC_Os03g48930 LOC_Os02g04160 LOC_Os01g05420 LOC_Os02g54340 LOC_Os02g58090 LOC_Os03g45170 LOC_Os01g62870 More.. |
| Downstream Genes | LOC_Os12g35030 LOC_Os07g29360 LOC_Os08g06070 LOC_Os07g02350 LOC_Os04g25550 LOC_Os05g08970 LOC_Os03g55490 LOC_Os08g31240 LOC_Os10g41520 LOC_Os04g36890 LOC_Os12g26030 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g54930.1 |
| Rice Genome Annotation | LOC_Os03g54930.1 |
| Ricechip | LOC_Os03g54930.1 |
| KEGG | dosa:Os03t0756500-00 |