RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g55090.1 View Network Show in Genome Browser |
| Other Names | Os03g0758100 |
| Description | alpha-glucan phosphorylast isozyme, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 31332396-31339163 Nucleotide Length: 1776 |
| Protein-coding | LOC_Os03g55090 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g32660 LOC_Os02g51070 LOC_Os02g56320 LOC_Os01g44220 LOC_Os01g52250 LOC_Os03g52460 LOC_Os02g03100 |
| Downstream Genes | LOC_Os05g45720 LOC_Os04g33460 LOC_Os06g51084 LOC_Os06g26234 LOC_Os06g04200 LOC_Os06g06560 LOC_Os06g12450 LOC_Os10g30156 LOC_Os07g22930 LOC_Os04g53310 LOC_Os08g09230 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00500 rn01100 rn01110 |
| Metacyc Pathways | PWY-842 GLYCOCAT-PWY PWY-5941 |
| Reference | |
|---|---|
| PubMed | 18621947 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g55090.1 |
| Rice Genome Annotation | LOC_Os03g55090.1 |
| Ricechip | LOC_Os03g55090.1 |
| KEGG | osa:4334171 dosa:Os03t0758100-01 |
| Entrez-Gene | 4334171 |