RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g55530.1 View Network Show in Genome Browser |
| Other Names | Os03g0764000 |
| Description | HLS, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 31597158-31599809 Nucleotide Length: 1242 |
| Protein-coding | LOC_Os03g55530 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g49230 LOC_Os03g46200 LOC_Os03g07990 LOC_Os03g05710 LOC_Os02g56219 LOC_Os02g46700 LOC_Os01g42470 LOC_Os03g09860 LOC_Os03g31690 |
| Downstream Genes | LOC_Os10g35680 LOC_Os09g31310 LOC_Os09g17850 LOC_Os08g01170 LOC_Os05g40260 LOC_Os05g32180 LOC_Os04g54330 LOC_Os03g58010 LOC_Os04g35430 LOC_Os10g28040 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g55530.1 |
| Rice Genome Annotation | LOC_Os03g55530.1 |
| Ricechip | LOC_Os03g55530.1 |
| KEGG | osa:4334212 dosa:Os03t0764000-00 |
| Entrez-Gene | 4334212 |