RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g56110.2 View Network Show in Genome Browser |
| Other Names | Os03g0771500 |
| Description | homeobox protein knotted-1, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 31964738-31970527 Nucleotide Length: 1011 |
| Protein-coding | LOC_Os03g56110 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g51050 LOC_Os03g13240 LOC_Os02g56130 LOC_Os03g13250 LOC_Os01g04950 LOC_Os03g13274 LOC_Os01g67630 LOC_Os03g04570 LOC_Os02g47090 LOC_Os02g46460 LOC_Os02g48570 More.. |
| Downstream Genes | LOC_Os12g04440 LOC_Os11g04670 LOC_Os08g36150 LOC_Os09g20640 LOC_Os07g01070 LOC_Os10g02240 LOC_Os10g02260 LOC_Os10g22560 LOC_Os10g02220 LOC_Os06g49220 LOC_Os10g02100 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR6246 |
| Reference | |
|---|---|
| PubMed | 10753522 10488233 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g56110.2 |
| Rice Genome Annotation | LOC_Os03g56110.2 |
| Ricechip | LOC_Os03g56110.2 |
| KEGG | osa:4334261 dosa:Os03t0771500-01 |
| Entrez-Gene | 4334261 |