RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os03g56280.1 View Network Show in Genome Browser
Other Names	Os03g0773800
Description	lactate/malate dehydrogenase, putative, expressed
Gene Attributes	Chromosome: Chr3 CDS Coordinates (5'-3'): 32086001-32089685 Nucleotide Length: 1065
Protein-coding	LOC_Os03g56280

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009056	catabolic process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0006629	lipid metabolic	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0005737	cytoplasm	Cellular Component	IEA
GO:0005576	extracellular region	Cellular Component	IEA
GO:0005777	peroxisome	Cellular Component	IEA
GO:0009536	plastid	Cellular Component	IEA
GO:0005773	vacuole	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g70960 LOC_Os02g07490 LOC_Os03g43890 LOC_Os02g53420 LOC_Os03g22810 LOC_Os03g16920 LOC_Os03g20750 LOC_Os03g02260 LOC_Os02g44470 LOC_Os01g50030 LOC_Os03g50540 More..
Downstream Genes	LOC_Os05g23620 LOC_Os11g20790 LOC_Os11g26850 LOC_Os12g13380 LOC_Os11g04070 LOC_Os08g03640 LOC_Os12g03880 LOC_Os06g46372 LOC_Os08g16480 LOC_Os06g36700 LOC_Os06g12530 More..

miRNA Regulations
miRNAs	osa-miR444a-3p.1 osa-miR444d.1

Pathways
KEGG Pathways	rn00010 rn00620 rn01100 rn01110 rn01120 rn00020 rn00630 rn00680 rn00710 rn00720
Metacyc Pathways	P124-PWY ANAEROFRUCAT-PWY PWY-3801 MALATE-ASPARTATE-SHUTTLE-PWY TCA ANARESP1-PWY GLUCONEO-PWY FERMENTATION-PWY P23-PWY P105-PWY

Database Links
Gramene	LOC_Os03g56280.1
Rice Genome Annotation	LOC_Os03g56280.1
Ricechip	LOC_Os03g56280.1
KEGG	osa:4334274 dosa:Os03t0773800-01
Entrez-Gene	4334274