RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g56300.1 View Network Show in Genome Browser |
| Other Names | Os03g0774200 |
| Description | 4Fe-4S binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 32092353-32095619 Nucleotide Length: 672 |
| Protein-coding | LOC_Os03g56300 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g50540 LOC_Os01g52214 LOC_Os03g30610 LOC_Os01g33960 LOC_Os02g24574 LOC_Os01g46070 LOC_Os02g32120 LOC_Os02g57180 LOC_Os03g03770 LOC_Os03g09210 LOC_Os01g61380 More.. |
| Downstream Genes | LOC_Os07g45090 LOC_Os05g45730 LOC_Os05g43360 LOC_Os07g02580 LOC_Os12g14939 LOC_Os07g41300 LOC_Os12g19420 LOC_Os06g22010 LOC_Os09g20440 LOC_Os12g34010 LOC_Os04g24520 More.. |
| Pathways | |
|---|---|
| Metacyc Pathways | AERESPDON-PWY ANARESPDON-PWY PWY-5083 PWY-4302 PWY-3781 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g56300.1 |
| Rice Genome Annotation | LOC_Os03g56300.1 |
| Ricechip | LOC_Os03g56300.1 |
| KEGG | osa:4334276 dosa:Os03t0774200-01 |
| Entrez-Gene | 4334276 |