RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g56580.1 View Network Show in Genome Browser |
| Other Names | Os03g0777000 |
| Description | no apical meristem protein, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 32234311-32236602 Nucleotide Length: 1089 |
| Protein-coding | LOC_Os03g56580 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g52700 LOC_Os02g52710 LOC_Os01g25386 LOC_Os02g44510 LOC_Os03g31150 LOC_Os03g04070 LOC_Os02g08180 LOC_Os03g55240 LOC_Os02g38230 LOC_Os01g40860 LOC_Os03g54790 More.. |
| Downstream Genes | LOC_Os05g23260 LOC_Os11g38780 LOC_Os05g49740 LOC_Os06g18000 LOC_Os06g16260 LOC_Os09g25960 LOC_Os05g23720 LOC_Os06g05740 LOC_Os08g17680 LOC_Os09g25990 LOC_Os09g27830 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g56580.1 |
| Rice Genome Annotation | LOC_Os03g56580.1 |
| Ricechip | LOC_Os03g56580.1 |
| KEGG | osa:4334294 dosa:Os03t0777000-01 |
| Entrez-Gene | 4334294 |