RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g56869.1 View Network Show in Genome Browser |
| Other Names | Os03g0781400 |
| Description | ribose-5-phosphate isomerase A, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 32394938-32397257 Nucleotide Length: 900 |
| Protein-coding | LOC_Os03g56869 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g56850 LOC_Os03g06740 LOC_Os03g08080 LOC_Os02g17940 LOC_Os03g27230 LOC_Os01g54020 LOC_Os02g02520 LOC_Os02g13140 |
| Downstream Genes | LOC_Os04g34460 LOC_Os10g28000 LOC_Os05g41190 LOC_Os09g24670 LOC_Os08g37790 LOC_Os08g27490 LOC_Os07g45430 LOC_Os07g42960 LOC_Os08g42850 LOC_Os09g30410 LOC_Os10g41480 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00030 rn00710 rn01100 rn01110 rn01120 |
| Metacyc Pathways | P124-PWY NONOXIPENT-PWY CALVIN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g56869.1 |
| Rice Genome Annotation | LOC_Os03g56869.1 |
| Ricechip | LOC_Os03g56869.1 |
| KEGG | osa:4334316 dosa:Os03t0781400-01 |
| Entrez-Gene | 4334316 |