RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os03g56950.3 View Network Show in Genome Browser
Other Names	Os03g0782500
Description	phytochrome-interacting factor 4, putative, expressed
Gene Attributes	Chromosome: Chr3 CDS Coordinates (5'-3'): 32432538-32435845 Nucleotide Length: 1233
Protein-coding	LOC_Os03g56950

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0009605	response to external stimulus	Biological Process	IEA
GO:0007165	signal transduction	Biological Process	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os03g45290 LOC_Os01g08020 LOC_Os01g22980 LOC_Os03g49220 LOC_Os03g07840 LOC_Os01g18080 LOC_Os03g52090 LOC_Os01g49190 LOC_Os01g48680 LOC_Os03g06630 LOC_Os01g16110 More..
Downstream Genes	LOC_Os06g09570 LOC_Os07g01920 LOC_Os07g38360 LOC_Os07g06820 LOC_Os11g32160 LOC_Os11g43860 LOC_Os04g40990 LOC_Os04g25440 LOC_Os05g30980 LOC_Os06g24870 LOC_Os08g01794 More..

miRNA Regulations
miRNAs	osa-miR5809

Reference
PubMed	21549224 17485859 22984180

Database Links
Gramene	LOC_Os03g56950.3
Rice Genome Annotation	LOC_Os03g56950.3
Ricechip	LOC_Os03g56950.3
KEGG	osa:4334324 dosa:Os03t0782500-01
Entrez-Gene	4334324