RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g57854.1 View Network Show in Genome Browser |
| Other Names | Os03g0792500 |
| Description | MBTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 32957898-32964626 Nucleotide Length: 1296 |
| Protein-coding | LOC_Os03g57854 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g56200 LOC_Os01g72020 LOC_Os02g39290 LOC_Os01g56490 LOC_Os02g16620 |
| Downstream Genes | LOC_Os06g31100 LOC_Os12g02530 LOC_Os12g30540 LOC_Os05g23950 LOC_Os04g14190 LOC_Os12g08070 LOC_Os11g36470 LOC_Os07g06950 LOC_Os04g14110 LOC_Os04g55860 LOC_Os06g30750 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1858a osa-miR1858b |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g57854.1 |
| Rice Genome Annotation | LOC_Os03g57854.1 |
| Ricechip | LOC_Os03g57854.1 |
| KEGG | osa:4334388 dosa:Os03t0792500-01 |
| Entrez-Gene | 4334388 |