RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g58060.1 View Network Show in Genome Browser |
| Other Names | Os03g0794800 |
| Description | XRN 5'-3' exonuclease N-terminus domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 33049333-33060421 Nucleotide Length: 2967 |
| Protein-coding | LOC_Os03g58060 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0009606 | tropism | Biological Process | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g59600 LOC_Os01g64690 LOC_Os01g70060 LOC_Os03g06190 LOC_Os02g42040 LOC_Os03g42320 LOC_Os03g08050 LOC_Os03g08020 LOC_Os03g08010 LOC_Os02g06500 LOC_Os02g32460 More.. |
| Downstream Genes | LOC_Os05g32580 LOC_Os07g19470 LOC_Os11g20689 LOC_Os05g41180 LOC_Os05g13950 LOC_Os04g52200 LOC_Os07g44620 LOC_Os04g58830 LOC_Os06g40120 LOC_Os03g61200 LOC_Os07g31340 More.. |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-4021 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g58060.1 |
| Rice Genome Annotation | LOC_Os03g58060.1 |
| Ricechip | LOC_Os03g58060.1 |
| KEGG | osa:4334408 dosa:Os03t0794800-01 |
| Entrez-Gene | 4334408 |