RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g58290.1 View Network Show in Genome Browser |
| Other Names | Os03g0797300 |
| Description | indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 33207531-33210400 Nucleotide Length: 981 |
| Protein-coding | LOC_Os03g58290 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g16630 LOC_Os03g03450 LOC_Os03g02030 LOC_Os03g15780 LOC_Os02g03850 LOC_Os03g45320 LOC_Os03g26440 LOC_Os01g40640 LOC_Os03g25940 |
| Downstream Genes | LOC_Os08g04180 LOC_Os06g42560 LOC_Os04g39270 LOC_Os09g08130 LOC_Os08g23150 LOC_Os12g42870 LOC_Os10g35940 LOC_Os03g61120 LOC_Os12g09290 LOC_Os05g19954 LOC_Os06g45250 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR3981-3p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00400 rn01100 rn01110 |
| Metacyc Pathways | TRPSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g58290.1 |
| Rice Genome Annotation | LOC_Os03g58290.1 |
| Ricechip | LOC_Os03g58290.1 |
| KEGG | dosa:Os03t0797300-01 |
| Entrez-Gene | 9270552 |