RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g58790.1 View Network Show in Genome Browser |
| Other Names | Os03g0802500 |
| Description | ATPase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 33482034-33484155 Nucleotide Length: 1563 |
| Protein-coding | LOC_Os03g58790 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g05730 LOC_Os01g62040 LOC_Os02g21970 LOC_Os03g18690 LOC_Os01g66330 LOC_Os03g31300 LOC_Os01g56600 LOC_Os02g08490 LOC_Os03g16390 |
| Downstream Genes | LOC_Os07g08170 LOC_Os10g30580 LOC_Os07g49150 LOC_Os12g07720 LOC_Os08g45010 LOC_Os05g44340 LOC_Os09g39910 LOC_Os06g03940 LOC_Os10g31864 LOC_Os05g43390 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR444a-3p.2 osa-miR444d.2 osa-miR444e |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g58790.1 |
| Rice Genome Annotation | LOC_Os03g58790.1 |
| Ricechip | LOC_Os03g58790.1 |
| KEGG | osa:4334467 dosa:Os03t0802500-01 |
| Entrez-Gene | 4334467 |