RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g58880.1 View Network Show in Genome Browser |
| Other Names | Os03g0803300 |
| Description | oxidoreductase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 33519850-33522241 Nucleotide Length: 933 |
| Protein-coding | LOC_Os03g58880 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g01010 LOC_Os03g07000 LOC_Os02g58070 LOC_Os02g34940 LOC_Os03g06990 LOC_Os01g07920 LOC_Os01g31770 LOC_Os03g55380 LOC_Os01g08570 LOC_Os02g02780 LOC_Os02g06580 More.. |
| Downstream Genes | LOC_Os11g09280 LOC_Os10g35470 LOC_Os10g27340 LOC_Os03g58890 LOC_Os07g09630 LOC_Os04g35600 LOC_Os05g41010 LOC_Os10g31420 LOC_Os10g28410 LOC_Os06g10870 LOC_Os10g31440 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5813 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00330 rn01100 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g58880.1 |
| Rice Genome Annotation | LOC_Os03g58880.1 |
| Ricechip | LOC_Os03g58880.1 |
| Entrez-Gene | 9269576 |