RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g59040.2 View Network Show in Genome Browser |
| Other Names | Os03g0805100 |
| Description | squalene synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 33605272-33612455 Nucleotide Length: 1212 |
| Protein-coding | LOC_Os03g59040 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g12910 LOC_Os01g62040 LOC_Os03g12900 LOC_Os01g62950 LOC_Os01g68950 LOC_Os01g68940 LOC_Os02g04710 LOC_Os01g25189 LOC_Os02g10740 LOC_Os02g04690 LOC_Os01g04260 More.. |
| Downstream Genes | LOC_Os06g51290 LOC_Os07g08170 LOC_Os07g10600 LOC_Os08g01840 LOC_Os04g11880 LOC_Os07g10490 LOC_Os09g33986 LOC_Os06g51250 LOC_Os09g39220 LOC_Os12g05810 LOC_Os04g44810 More.. |
| Reference | |
|---|---|
| PubMed | 21926092 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g59040.2 |
| Rice Genome Annotation | LOC_Os03g59040.2 |
| Ricechip | LOC_Os03g59040.2 |
| KEGG | osa:4334492 dosa:Os03t0805100-01 |
| Entrez-Gene | 4334492 |