RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g59110.1 View Network Show in Genome Browser |
| Other Names | Os03g0805800 |
| Description | pheophorbide a oxygenase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 33649350-33653755 Nucleotide Length: 1668 |
| Protein-coding | LOC_Os03g59110 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g32120 LOC_Os02g19150 LOC_Os02g53860 |
| Downstream Genes | LOC_Os06g48510 LOC_Os07g37030 LOC_Os04g32660 LOC_Os07g07480 LOC_Os05g49380 LOC_Os04g52500 LOC_Os04g35840 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g59110.1 |
| Rice Genome Annotation | LOC_Os03g59110.1 |
| Ricechip | LOC_Os03g59110.1 |
| KEGG | osa:9272323 dosa:Os03t0805800-01 |
| Entrez-Gene | 9272323 |