RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g59620.1 View Network Show in Genome Browser |
| Other Names | Os03g0810900 |
| Description | phospholipase, patatin family, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 33941624-33946147 Nucleotide Length: 2463 |
| Protein-coding | LOC_Os03g59620 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g47410 LOC_Os02g53420 LOC_Os03g02260 LOC_Os03g56944 LOC_Os03g57420 LOC_Os03g02680 LOC_Os02g36974 LOC_Os01g51380 LOC_Os02g36340 LOC_Os03g01850 LOC_Os03g17790 More.. |
| Downstream Genes | LOC_Os07g06590 LOC_Os12g34874 LOC_Os06g37180 LOC_Os07g03230 LOC_Os04g38870 LOC_Os10g22380 LOC_Os09g31486 LOC_Os05g38570 LOC_Os04g37690 LOC_Os06g15990 LOC_Os06g46310 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5162 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00565 rn01100 rn00564 rn00592 rn00591 rn00590 |
| Metacyc Pathways | LIPASYN-PWY PWY-735 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g59620.1 |
| Rice Genome Annotation | LOC_Os03g59620.1 |
| Ricechip | LOC_Os03g59620.1 |
| KEGG | osa:4334536 dosa:Os03t0810900-01 |
| Entrez-Gene | 4334536 |