RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g59640.1 View Network Show in Genome Browser |
| Other Names | Os03g0811100 |
| Description | magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 33955198-33961962 Nucleotide Length: 2265 |
| Protein-coding | LOC_Os03g59640 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g20700 LOC_Os03g34040 LOC_Os03g56840 LOC_Os01g72800 LOC_Os03g19650 LOC_Os02g57670 LOC_Os03g13970 LOC_Os02g56280 LOC_Os01g69950 LOC_Os03g03470 LOC_Os01g73000 More.. |
| Downstream Genes | LOC_Os07g46310 LOC_Os07g42280 LOC_Os06g22690 LOC_Os04g01160 LOC_Os05g41190 LOC_Os05g01270 LOC_Os04g34460 LOC_Os06g13040 LOC_Os12g34890 LOC_Os09g30410 LOC_Os06g34040 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00860 rn01100 rn01110 |
| Metacyc Pathways | CHLOROPHYLL-SYN |
| Reference | |
|---|---|
| PubMed | 16915519 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g59640.1 |
| Rice Genome Annotation | LOC_Os03g59640.1 |
| Ricechip | LOC_Os03g59640.1 |
| KEGG | osa:4334537 dosa:Os03t0811100-01 |
| Entrez-Gene | 4334537 |