RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g60992.1 View Network Show in Genome Browser |
| Other Names | Os03g0825000,Os03g0824900 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 34646212-34653500 Nucleotide Length: 2379 |
| Protein-coding | LOC_Os03g60992 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g24354 LOC_Os02g07230 LOC_Os02g47590 LOC_Os03g42110 LOC_Os03g29190 LOC_Os03g29240 LOC_Os02g14770 LOC_Os01g55350 LOC_Os01g02050 LOC_Os01g54230 LOC_Os02g44000 More.. |
| Downstream Genes | LOC_Os12g13320 LOC_Os11g19770 LOC_Os10g35170 LOC_Os11g11440 LOC_Os04g51920 LOC_Os09g14670 LOC_Os08g27840 LOC_Os04g46460 LOC_Os06g04070 LOC_Os07g39690 LOC_Os04g01690 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1438 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g60992.1 |
| Rice Genome Annotation | LOC_Os03g60992.1 |
| Ricechip | LOC_Os03g60992.1 |