RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g61740.1 View Network Show in Genome Browser |
| Other Names | Os03g0833100 |
| Description | sex determination protein tasselseed-2, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 35002598-35004190 Nucleotide Length: 837 |
| Protein-coding | LOC_Os03g61740 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g58580 LOC_Os01g71400 LOC_Os02g39490 LOC_Os02g38440 LOC_Os02g02470 LOC_Os01g71340 LOC_Os03g29850 LOC_Os02g36940 LOC_Os02g36950 LOC_Os01g62900 LOC_Os03g17000 More.. |
| Downstream Genes | LOC_Os10g02970 LOC_Os11g24484 LOC_Os09g17750 LOC_Os08g37130 LOC_Os12g04220 LOC_Os09g37600 LOC_Os05g38150 LOC_Os12g43740 LOC_Os04g38420 LOC_Os11g04460 LOC_Os06g04620 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn01100 rn01110 rn01120 |
| Metacyc Pathways | PWY-5079 P127-PWY FERMENTATION-PWY PWY-3801 PWY66-21 PWY-5057 PWY-5078 PWY-5082 PWY-5076 ENTBACSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g61740.1 |
| Rice Genome Annotation | LOC_Os03g61740.1 |
| Ricechip | LOC_Os03g61740.1 |
| KEGG | osa:4334683 dosa:Os03t0833100-01 |
| Entrez-Gene | 4334683 |